Open JohnUrban opened 5 years ago
Hi,
I want to see what "summarizeModifications" outputs, but I am not familiar with one of its input requirements.
Specifically how do I generate the alignmentSummary GFF requested here:
$ summarizeModifications -h usage: summarizeModifications [-h] [--version] [--emit-tool-contract] [--resolved-tool-contract RESOLVED_TOOL_CONTRACT] [--log-file LOG_FILE] [--log-level {DEBUG,INFO,WARNING,ERROR,CRITICAL} | --debug | --quiet | -v] modifications alignmentSummary gff_out Summarizes kinetic modifications in the alignment_summary.gff file. positional arguments: modifications Base modification GFF file alignmentSummary Alignment summary GFF gff_out Coverage summary for regions (bins) spanning the reference with basemod results for each region
Many thanks,
John
Hi,
I want to see what "summarizeModifications" outputs, but I am not familiar with one of its input requirements.
Specifically how do I generate the alignmentSummary GFF requested here:
Many thanks,
John