I'm running ipdSummary using an aligned bam file of about 275 Gb (Aligned.bam) and a fasta genome of about 400 Mb (Assembly.fasta). This is the command line I'm using:
After ten hours of processing the RAM of my machine (128 Gb) got completely saturated and the process shifted to the swap memory, causing a very huge slowdown of the process.
Is there an option to set the cap of RAM to be used or some other option to avoid this problem? I didn't find any specific option regarding the RAM in the help section. Any suggestions?
I'm running ipdSummary using an aligned bam file of about 275 Gb (Aligned.bam) and a fasta genome of about 400 Mb (Assembly.fasta). This is the command line I'm using:
After ten hours of processing the RAM of my machine (128 Gb) got completely saturated and the process shifted to the swap memory, causing a very huge slowdown of the process.
Is there an option to set the cap of RAM to be used or some other option to avoid this problem? I didn't find any specific option regarding the RAM in the help section. Any suggestions?
Thanks