search

PacificBiosciences / kineticsTools

Tools for detecting DNA modifications from single molecule, real-time sequencing data
21 stars 21 forks source link

ValueError: invalid literal for int() with base 16: 'myid' #94

Closed tongyin121 closed 2 years ago

tongyin121 commented 2 years ago

Hi, I got an problem when I ran ipdsummary, and here is the error: invalid literal for int() with base 16: 'myid' Traceback (most recent call last): File "/usr_storage/zyl/software/smrtlink/install/smrtlink-release_11.0.0.146107/bundles/smrttools/install/smrttools-release_11.0.0.146107/private/thirdparty/python3/python3_3.9.6/site-packages/pbcore/io/dataset/DataSetIO.py", line 2171, in _openFiles resource = IndexedBamReader(location) File "/usr_storage/zyl/software/smrtlink/install/smrtlink-release_11.0.0.146107/bundles/smrttools/install/smrttools-release_11.0.0.146107/private/thirdparty/python3/python3_3.9.6/site-packages/pbcore/io/align/BamIO.py", line 400, in init super().init(fname, referenceFastaFname) File "/usr_storage/zyl/software/smrtlink/install/smrtlink-release_11.0.0.146107/bundles/smrttools/install/smrttools-release_11.0.0.146107/private/thirdparty/python3/python3_3.9.6/site-packages/pbcore/io/align/BamIO.py", line 197, in init self._loadReadGroupInfo() File "/usr_storage/zyl/software/smrtlink/install/smrtlink-release_11.0.0.146107/bundles/smrttools/install/smrttools-release_11.0.0.146107/private/thirdparty/python3/python3_3.9.6/site-packages/pbcore/io/align/BamIO.py", line 86, in _loadReadGroupInfo rgID = rgAsInt(rg["ID"]) File "/usr_storage/zyl/software/smrtlink/install/smrtlink-release_11.0.0.146107/bundles/smrttools/install/smrttools-release_11.0.0.146107/private/thirdparty/python3/python3_3.9.6/site-packages/pbcore/io/align/_BamSupport.py", line 66, in rgAsInt return np.int32(int(rgIdString.split("/")[0], 16)) ValueError: invalid literal for int() with base 16: 'myid' Would you help me to fix it? Thank you for your replication.