issues
search
PacificBiosciences
/
kineticsTools
Tools for detecting DNA modifications from single molecule, real-time sequencing data
19
stars
21
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
the default value of the argument "maxCoverage"
#51
PengNi
closed
7 years ago
3
8-bit or 16-bit IPD encoding?
#50
dbrowneup
closed
7 years ago
1
Please use release tags
#49
tillea
opened
7 years ago
1
reduce numWorkers to 4 in cram tests (limited by Bamboo build agents)
#48
natechols
closed
7 years ago
0
fix KeyError reported by @JohnUrban
#47
natechols
closed
7 years ago
0
--refcontigs error
#46
JohnUrban
closed
7 years ago
6
ipdSummary is hanging at the same point every time I re-run
#45
JohnUrban
opened
7 years ago
6
m6A,m4C,m5C_TET
#44
JohnUrban
opened
7 years ago
6
Temporarily, model Sequel data using the P5-C3 model
#43
dalexander
closed
7 years ago
0
Update filenames
#42
ghost
closed
7 years ago
0
update file metadata
#41
natechols
closed
7 years ago
0
update manual
#40
natechols
closed
7 years ago
0
KeyError: 'IPD'
#39
ebioman
closed
8 years ago
5
cram test fix
#38
natechols
closed
8 years ago
0
HDF5 scaling
#37
natechols
closed
8 years ago
0
module cleanup
#36
natechols
closed
8 years ago
0
fixes for BigWig and HDF5 output
#35
natechols
closed
8 years ago
0
clarify output labels
#34
natechols
closed
8 years ago
0
fix for empty bigwig output
#33
natechols
closed
8 years ago
0
bug fix for bigwig output: don't assume all nucleotides and both strands will be represented
#32
natechols
closed
8 years ago
0
temporarily disabling pyBigWig dependency because it breaks our build
#31
natechols
closed
8 years ago
0
Test fix
#30
natechols
closed
8 years ago
0
make pybigwig a required dependency
#29
natechols
closed
8 years ago
0
Computing modifications for a subset of ZMWs
#28
vlpotapov
opened
8 years ago
0
KeyError: 'tMean'
#27
tay45
opened
8 years ago
2
Detection of 5mC without TET
#26
eltonjrv
opened
8 years ago
7
use HDF5 output instead of CSV in tool contract interface
#25
natechols
closed
8 years ago
0
fix range
#24
natechols
closed
8 years ago
0
fix cram test
#23
natechols
closed
8 years ago
0
Bigwig output
#22
natechols
closed
8 years ago
0
Apparent Discrepancy in Threshhold Interperetation for "nDetected" field of motifs_summary.csv
#21
biominer
opened
8 years ago
0
ipdSummary KeyError related to Reference
#20
cwarden45
closed
8 years ago
11
Skip installing orphan executables
#19
mhsieh
closed
5 years ago
2
bin/... is copied into site-packages/
#18
mhsieh
closed
8 years ago
2
ipdSummary doesn't report individual values that are used for tMean calculation
#17
biomonika
opened
8 years ago
0
CircleCI integration
#16
natechols
closed
8 years ago
1
KeyError: 'IPD'
#15
eltonjrv
opened
8 years ago
6
ipdSummary.py HDF5 claims an infinite loop
#14
eltonjrv
opened
8 years ago
0
Is kineticsTools an installable and command-line-used methods
#13
qihualiang
opened
8 years ago
7
ipdSummary : "Exception: Invalid type to getFileHandle"
#12
wilfriedguiblet
opened
8 years ago
2
Examples of how to run this tools
#11
biomonika
opened
8 years ago
0
[ERROR] Child process exited with exitcode=-9. Aborting.
#10
guleiathms
opened
9 years ago
10
IPD not loaded in cmp.h5
#9
jayhesselberth
closed
9 years ago
7
what's the meaning of methylation fraction = 0
#8
guleiathms
closed
8 years ago
5
ipdsummary for target regions
#7
guleiathms
closed
9 years ago
8
Question about logos
#6
misic
closed
9 years ago
1
ipdSummary.py on p4-c2 test data throws Attribute error
#5
pb-jlandolin
closed
9 years ago
1
help with reprocessMotifSites.py?
#4
llwestphal
closed
10 years ago
2
predictIpdFunc called predictIpdFuncModel and cmp.h5 version checking
#3
jgurtowski
closed
9 years ago
0
How to view smMods.csv with smrt view?
#2
km1500
closed
10 years ago
1
Previous
Next