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PacificBiosciences / paraphase

HiFi-based caller for highly similar paralogous genes
BSD 3-Clause Clear License
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Paraphase determines output prefix from input filename #17

Closed williamrowell closed 3 months ago

williamrowell commented 7 months ago

If the sample name isn't sanitized in the expected way (e.g., contains a .), the output names may be non-unique. For setting the prefix, I recommend determining the sample name from the read group headers instead of the filename, and providing a --prefix flag for intentional override.

https://github.com/PacificBiosciences/HiFi-human-WGS-WDL/issues/113

xiao-chen-xc commented 5 months ago

This is fixed in v3.1.1