PacificBiosciences / paraphase

HiFi-based caller for highly similar paralogous genes
BSD 3-Clause Clear License
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Remove the need for DeepVariant #2

Closed xiao-chen-xc closed 1 year ago

xiao-chen-xc commented 1 year ago

Perform variant calling directly from data. Removed the need for DeepVariant. Variant calling is done on reads that have already been assigned to each haplotype, i.e. a ploidy of one, by taking the most supported base at each position.