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PacificBiosciences / pb-CpG-tools

Collection of tools for the analysis of CpG data
BSD 3-Clause Clear License
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Can I used minimap2 for alignment ? #27

Closed hmyh1202 closed 1 year ago

hmyh1202 commented 1 year ago

When I use the minimap2 for align the PacBio read to reference, the BAM file did not record the ML info

If there is any parameters for alignment ?

Thank you !

armintoepfer commented 1 year ago

Use https://github.com/PacificBiosciences/pbmm2