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PacificBiosciences / pb-CpG-tools

Collection of tools for the analysis of CpG data
BSD 3-Clause Clear License
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added consensus by haplotype feature #4

Closed dportik closed 2 years ago

dportik commented 2 years ago

In addition to a consensus from all reads, also include consensus seqs generated for each haplotype. This allows recovery of CG sites which are specific to a particular haplotype, but which may be missed in the consensus from all reads (which is pure majority rules).