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PacificBiosciences / pb-CpG-tools

Collection of tools for the analysis of CpG data
BSD 3-Clause Clear License
74 stars 6 forks source link

Primrose unavailable #51

Closed scorreard closed 1 year ago

scorreard commented 1 year ago

Hi team,

I used to use the pipeline with primrose. Unfortunately, it seems that primrose 'disappeared'? It is no longer on GitHub, conda, or even singularity.

Could you let me know what happened and what is the way forward to extract the 5mC base modification values from the MM and ML auxiliary tags which encode base modifications and confidence values?

Thanks, Best,

Solenne

ctsa commented 1 year ago

Hi Solenne,

There will be a new 5mC caller release in a few weeks. If needed you can currently run 5mC calling through SMRTLink:

https://www.pacb.com/support/software-downloads/

scorreard commented 1 year ago

Thanks! Looking forward to it!