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PacificBiosciences / pb-falcon-phase

FALCON-Phase integrates PacBio long-read assemblies with Phase Genomics Hi-C data to create phased, diploid, chromosome-scale scaffolds
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Pseudohaplotypes results in the output folder are still minced #8

Closed cgy0627 closed 3 years ago

cgy0627 commented 3 years ago

Hello,

I have finished running FALCON-Phase on my data, but the fasta files in the output folder contains ID names such as: " >000000F::000000F:0-61165_0 " >000000F::000000F_015_01:0-60186_0 " >000000F::000000F:125147-696346_0 " >000000F::000000F:0-61165_1 " >000000F::000000F:61165-125147_1 " >000000F::000000F:125147-696346_1

The manual says it should have names like: " >000000F_0 " >000001F_0 " >000000F_1 " >000001F_1

Were the contigs supposed to merge in the last step? What could I do to solve this issue?

Thanks in advance.