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PacificBiosciences / pb-metagenomics-tools

Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics
BSD 3-Clause Clear License
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Error in rule CopyDAStoolBins: #45

Closed jmartinsjrbr closed 1 year ago

jmartinsjrbr commented 1 year ago

I was running HiFi MAG pipeline and there was an error in rule "CopyDAStoolBins. I checked on Snakefile-hifimags.smk file and found that at line 351 is missing a slash just before *.fa like bellow:

"cp {input.binsdir}*.fa {input.copydir} 2> {log} && touch {output}"

I have replaced the line above by including a slash before *.fa:

"cp {input.binsdir}/*.fa {input.copydir} 2> {log} && touch {output}"

Now the pipeline finishes without errors.

dportik commented 1 year ago

Hi @jmartinsjrbr , Thanks for your patience. This was fixed in #48 .