Snakemake was set to run with name from <= v1.1.3, causing errors if newer version was installed through conda.
This bug fix now pins the version of DAS_Tool to 1.1.6 and uses the Fasta_to_Contig2Bin.sh name in the workflow. This should eliminate errors stemming from incompatible version and script name.
Update to HiFi-MAG-Pipeline:
Depending on version of DAS_Tool, the name of the helper script used to generate input files will change.
Digging in to the current script shows the prior name still listed, adding to confusion: https://github.com/cmks/DAS_Tool/blob/master/src/Fasta_to_Contig2Bin.sh
<= v1.1.3 :
Fasta_to_Scaffolds2Bin.sh
Snakemake was set to run with name from <= v1.1.3, causing errors if newer version was installed through conda.
This bug fix now pins the version of DAS_Tool to 1.1.6 and uses the
Fasta_to_Contig2Bin.sh
name in the workflow. This should eliminate errors stemming from incompatible version and script name.