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PacificBiosciences / pb-metagenomics-tools

Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics
BSD 3-Clause Clear License
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Fix DAS_Tool bug #55

Closed dportik closed 1 year ago

dportik commented 1 year ago

Update to HiFi-MAG-Pipeline:

Depending on version of DAS_Tool, the name of the helper script used to generate input files will change.

Digging in to the current script shows the prior name still listed, adding to confusion: https://github.com/cmks/DAS_Tool/blob/master/src/Fasta_to_Contig2Bin.sh

<= v1.1.3 : Fasta_to_Scaffolds2Bin.sh

v1.1.3 : Fasta_to_Contig2Bin.sh

Snakemake was set to run with name from <= v1.1.3, causing errors if newer version was installed through conda.

This bug fix now pins the version of DAS_Tool to 1.1.6 and uses the Fasta_to_Contig2Bin.sh name in the workflow. This should eliminate errors stemming from incompatible version and script name.