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PacificBiosciences / pbbioconda

PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.
BSD 3-Clause Clear License
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When mapping Isoseq reads to genome, do I need the repeatmasked genome? #617

Closed Yuzhang0102 closed 10 months ago

Yuzhang0102 commented 10 months ago

I used the non-repeatmasked genome when mapping the long read to genome, but I have some transcripts from repeat region. So do I need the repeatmasked genome when annotated the transcripts?

armintoepfer commented 10 months ago

That's a scientific question and not a technical problem we can help you with.