Hi, I am having trouble using lima with the --overwrite-biosample-names to update the sample names. When I go to the lima help menu, it does not show as an option. Has this been implemented? Below is the error message. I have the most recent updates of all of the packages.
lima ERROR: [pbcopper] command line parser ERROR: unknown option 'overwrite-biosample-names'
This is the documentation on isoseq website:
If your sample is barcoded at the cDNA level, use --overwrite-biosample-names to update the sample names.
$ lima movieX.hifi_reads.bam barcoded_primers.fasta movieX.fl.bam --isoseq --peek-guess --overwrite-biosample-names
Hi, I am having trouble using lima with the --overwrite-biosample-names to update the sample names. When I go to the lima help menu, it does not show as an option. Has this been implemented? Below is the error message. I have the most recent updates of all of the packages.
lima ERROR: [pbcopper] command line parser ERROR: unknown option 'overwrite-biosample-names'
This is the documentation on isoseq website:
If your sample is barcoded at the cDNA level, use --overwrite-biosample-names to update the sample names. $ lima movieX.hifi_reads.bam barcoded_primers.fasta movieX.fl.bam --isoseq --peek-guess --overwrite-biosample-names