Error in FUN(X[[i]], ...) : object 'within_cage_peak' not found
Calls: generatePDFreport ... <Anonymous> -> f -> scales_add_defaults -> lapply -> FUN
In addition: Warning messages:
1: Using alpha for a discrete variable is not advised.
2: Using alpha for a discrete variable is not advised.
3: Using alpha for a discrete variable is not advised.
4: Using alpha for a discrete variable is not advised.
Command used Rscript $report_pigeon/pigeon_report.R *_lite_classification.txt *_lite_junctions.txt $report_pigeon False both Note:
I had no issue (still working) with pigeon_v1.0.0, but only with the new release (v1.1.0 and v1.2.0). I needed to update it as v1.0.0 was not producing the filt_summary.txt from the filter command.
Hi I am trying to generate the report from "https://github.com/ConesaLab/SQANTI3/tree/master/utilities/report_pigeon" using the results of a pigeon but getting some errors:
sqanti3 issue: https://github.com/ConesaLab/SQANTI3/issues/236
Command used
Rscript $report_pigeon/pigeon_report.R *_lite_classification.txt *_lite_junctions.txt $report_pigeon False both
Note: I had no issue (still working) with pigeon_v1.0.0, but only with the new release (v1.1.0 and v1.2.0). I needed to update it as v1.0.0 was not producing the filt_summary.txt from the filter command.