To understand the steps in background of identification of structural variants by pbsv tool, I performed the following steps:
Simulated the deletions in the reference GRCh38 genome in R (using RVSim package)
Simulated genome was aligned (using pbmm2 tool)
Sorted the simulated genome (samtools)
Discovered structural variants (pbsv tool)
No structural variants was there in the simulated genome after running pbsv analysis. Is something I have to run or have missed here. It would be helpful to know how the structural variants are identified
Hello,
To understand the steps in background of identification of structural variants by pbsv tool, I performed the following steps:
No structural variants was there in the simulated genome after running pbsv analysis. Is something I have to run or have missed here. It would be helpful to know how the structural variants are identified
Thank you