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PacificBiosciences / pbbioconda

PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.
BSD 3-Clause Clear License
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pbmm2 option like `-K` in minimap2 #635

Closed SHuang-Broad closed 5 months ago

SHuang-Broad commented 7 months ago

Hi, a quick question, is the pbmm2 option --chunk-size intended to act as proxy to -K in minimap2?

Thanks!

-K NUM | Number of bases loaded into memory to process in a mini-batch [500M]. Similar to option -I, K/M/G/k/m/g suffix is accepted. A large NUM helps load balancing in the multi-threading mode, at the cost of increased memory.
armintoepfer commented 5 months ago

There is no such feature currently. I've put it as a request in our backlog