Closed MengjunWu closed 7 months ago
Hi @MengjunWu, Thank you for opening this issue. You are correct. We run isoseq tag
before isoseq refine
. We will update the documentation to reflect this.
Many thanks for the reply.
There is another problem with isoseq tag, When I run the command, it does not return the flt.transcriptset.xml file. I think it suppose to generate both bam and xml file?
Hi,
I am following the single cell CLI Workflow for analyzing iso-seq data.
In Step 4 - Refine: the input files for isoseq refine are specified as: