Operating system
linux
I call SV with PBSV call ,and I get some INS.DUP,BND,Now I want to get ALT DUP sequences ,but it does not appear in vcf file,
How can I get this sequences?
chr1 339052 pbsv.INS.DUP.19 C . PASS SVTYPE=DUP;END=339380;SVLEN=328 GT:AD:DP 0/1:6,5:11
chr1 339337 pbsv.INS.DUP.20 T . PASS SVTYPE=DUP;END=339450;SVLEN=113 GT:AD:DP 0/1:5,5:10
Operating system linux I call SV with PBSV call ,and I get some INS.DUP,BND,Now I want to get ALT DUP sequences ,but it does not appear in vcf file, How can I get this sequences? chr1 339052 pbsv.INS.DUP.19 C . PASS SVTYPE=DUP;END=339380;SVLEN=328 GT:AD:DP 0/1:6,5:11
chr1 339337 pbsv.INS.DUP.20 T . PASS SVTYPE=DUP;END=339450;SVLEN=113 GT:AD:DP 0/1:5,5:10