Isoseq3 cluster fatal run

PacificBiosciences / pbbioconda

PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.

BSD 3-Clause Clear License

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Closed EglantineMB closed 3 months ago

EglantineMB commented 6 months ago

Package name isoseq3

Conda environment isoseq3

Describe the bug isoseq3 cluster stops with fatal error

Error message 20240405 08:10:23.800 -|- FATAL -|- Run -|- 0x2b27eb67d980|| -|- isoseq cluster ERROR: map::at

To Reproduce from flnc file provided by sequencing center:

isoseq3 cluster flnc-1.bam test.bam

Expected behavior I would have expected to obtain a set of clustered isoforms called test.bam

armintoepfer commented 6 months ago

Can you please provide an example to reproduce

armintoepfer commented 3 months ago

Lack of input, closing