Hi,
the adotto paper (nat biotech 2024) mentioned a total of 1.7m TR loci in hg38, whereas the adotto_hg38 bed file in TRGT tutorial has about 0.9m rows, is there any preprocess and filter step between them? Thanks for your help!
Thanks for the question! In the paper describing TRGT we used an older version of the Adotto repeat catalog. Here is a link to the version 1.0 of the Adotto catalog from @ACEnglish adapted for TRGT by @mdanzi.
Hi, the adotto paper (nat biotech 2024) mentioned a total of 1.7m TR loci in hg38, whereas the adotto_hg38 bed file in TRGT tutorial has about 0.9m rows, is there any preprocess and filter step between them? Thanks for your help!