It would be extremely useful to report the MC on the reference allele. This could go in the INFO. This would enable us to detect repeat differences from the reference other than simply looking at allele length and the entire sequence. If it adds much to run-time, this could be pre-calculated for a defined regions.
It would be extremely useful to report the MC on the reference allele. This could go in the INFO. This would enable us to detect repeat differences from the reference other than simply looking at allele length and the entire sequence. If it adds much to run-time, this could be pre-calculated for a defined regions.