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PaddlePaddle / PaddleHelix

Bio-Computing Platform Featuring Large-Scale Representation Learning and Multi-Task Deep Learning “螺旋桨”生物计算工具集
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Requirement.txt for helixdock and examples #289

Open lifecodetest opened 6 months ago

lifecodetest commented 6 months ago

Would you please add the relevant requirement.txt file as given in the installation instructions for helixdock? Would you also please provide some example codes and tutorials (e.g. in jupyter notebook format) on how to generate results with helixdock for problems other than reproducing the results from your paper?

Noisyntrain commented 6 months ago

Hi lifecodetest, the requirements.txt is now uploaded. The tutorials is currently being developed and tested and will be uploaded soon. You can also generate results in our webstie : https://paddlehelix.baidu.com/app/drug/helix-dock/forecast .Hope this can be helpful to you.

lifecodetest commented 6 months ago

Thanks. Look forward to the tutorials for helixdock.

lifecodetest commented 6 months ago

HI actually I encountered error when trying to pip install logging, but it seems like there is no such need if one has installed python (https://stackoverflow.com/questions/33175525/unable-to-install-logging-module-python) so you may want to remove logging from the requirements.txt file.

Noisyntrain commented 6 months ago

Thank you for the reminding, logging is now removed from the requirements.txt :)