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PalMuc / TransPi

TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly
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no perl in cointainer #15

Closed rsuchecki closed 3 years ago

rsuchecki commented 3 years ago

It appears that the mulled container https://depot.galaxyproject.org/singularity/mulled-v2-962eae98c9ff8d5b31e1df7e41a355a99e1152c4:5aac6d1d2253d47aee81f01cc070a17664c86f07-0 lacks perl interpreter required by the evigene process:

Command output:

  -- Starting EviGene --

Command error:
  .command.sh: /path/redacted/TransPi/scripts/evigene/scripts/prot/tr2aacds.pl: /usr/bin/perl: bad interpreter: No such file or directory
rivera10 commented 3 years ago

I'll check and work on a solution for that. Thanks for letting us know.

rivera10 commented 3 years ago

I submitted a change to the mulled container. See here

rsuchecki commented 3 years ago

Great, I think the container image should become available after the PR is merged 👍

rivera10 commented 3 years ago

Still waiting for the mulled container. Issue was closed in the PR of the new version

rivera10 commented 3 years ago

Mulled container info was added. Anything let me know.