PR for TransPi v1.1.0

[rivera10]

Fixed issues

• Fix #8
• Fix #9
• Closes #14
• Fix #15

  New features

• Closes #5
• Closes #10
• Closes #11

  Other changes

• Deconstruct combined processes (e.g. fastp and jq) and add individual containers
• Add saveReads option
• Print more log info
• Precheck scipt was refactored:
  • Download DBs
  • Provide the PATH of your DBs
  • Update DBs
  • Provide Taxon ID to download proteins from Uniprot
• Each process will check software versions individually
• New RUN_INFO.txt with all info from run
• Use pigz in "process prepare_reads"
• Psytrans is now a separate conda package (v2.0)