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PalMuc / TransPi

TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly
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Unknown error #18

Closed kazumaxneo closed 3 years ago

kazumaxneo commented 3 years ago

It is a great tool and I would love to use it for my RNA seq. However, when I download and run the database, it quits with the following error immediately after starting.

$ nextflow run TransPi.nf --onlyAsm --reads '/media/kazu/8TB2/TransPi/quality_trimmed_R[1,2].fastq.gz' --k 41,53 --maxReadLen 84 -profile conda N E X T F L O W ~ version 20.07.1 Launching TransPi.nf [sharp_lorenz] - revision: 6acd9a7ecd Script compilation error

nextflow version is 20.07.1.5412

rivera10 commented 3 years ago

Hello @kazumaxneo

I did a test run and for me is working fine. Also I asked a colleague and he told me that he has no issues. I will suggest to git pull just in case you have an old version of the tool. Let me know if the problem continues.

Best, Ramon

kazumaxneo commented 3 years ago

Hi Ramon,

Thanks for your response. Sees to be a problem with my nextflow version. I updated nextflow to the latest version, and it now runs perfectly. Thank you for teaching me so kindly.

rivera10 commented 3 years ago

I'll close this issue. If you need further help let us know.