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PalMuc / TransPi

TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly
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Running onlyEvi #23

Open andypaige772 opened 3 years ago

andypaige772 commented 3 years ago

Hi,

I am trying to run onlyEvi on a single fasta file of a de novo transcriptome. I try the code ./nextflow run TransPi.nf --onlyEvi -profile conda

but received the following error:

N E X T F L O W  ~  version 20.10.0
Launching `TransPi.nf` [backstabbing_torvalds] - revision: 6acd9a7ecd
====================================================
  TransPi - Transcriptome Analysis Pipeline v1.1.0-rc
====================================================
TransPi.nf Directory:   /burg/home/gn2311/TransPi/TransPi.nf
Launch Directory:       /burg/home/gn2311/TransPi
Results Directory:      results
Work Directory:         /burg/home/gn2311/TransPi/work
TransPi DBs:            /burg/home/gn2311/TransPi
Busco DB:               /burg/home/gn2311/TransPi/DBs/busco_db/diptera_odb10

        Running TransPi with your dataset

        Running Evidential Gene analysis only

Local avail `memory` attribute cannot zero. Expression: (availMemory > 0). Values: availMemory = 0

 -- Check script 'TransPi.nf' at line: 1111 or see '.nextflow.log' file for more details

I checked line 1111 in TransPi.nf and I think one of the parameters are not set correctly. Please let me know if this issue can be resolved. Thank you for your help.

rivera10 commented 3 years ago

Hello @andypaige772,

Very odd, I have never seen that issue. Did you modify the memory info of the config file? I'll do a test run to check, just in case. Let me know

Best, Ramon