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PalMuc / TransPi

TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly
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Error related to BUSCO #9

Closed gushiro closed 3 years ago

gushiro commented 3 years ago

Hi there, I am having problems installing TransPi with the "bash precheck_TransPi.sh" . The installation ended up in:

 -- Selecting BUSCO V4 database -- 

     -- ERROR: Please make sure that file "busV4list.txt" is available. Please check requirements and rerun the pre-check --

Thanks in advance!

rivera10 commented 3 years ago

Hello @gushiro,

You will get that error if you run the precheck and want to install the DBs in a different directory from where the repository was cloned. Thanks for reporting this. I'll work on a solution.

In the meantime you can either run the precheck in the same directory where TransPi was cloned, or you can copy the conf directory (from TransPi directory) to the PATH where you want to install the DBs.

Let me know if you have further issues.

Best, Ramon

rivera10 commented 3 years ago

I fixed this on the dev branch. See 0011ce1 . Let me know if you need further help.