Open Erin-Chee opened 5 months ago
Small update: I tried python3 --version
which did return python3.9, but after an attempt changing the concat_by_homology_multiple_species.nf
script from python
to python3
it returned a ModuleNotFoundError instead.
I changed the bengal_py.sif
container to sandbox format and the modules are there now, and the pipeline runs when I use the container in sandbox format.
Hi, thank you for making the pipeline!
I am currently trying to run concat_by_homology_multiple_species.nf with some sample data but have been getting an error, (command.sh: line 2: python: command not found) and am not sure what is causing it.
Error message
I tried redownloading the bengal_py.sif container but the error hasn't changed. I tried using a Singularity Shell to access the container and check python with
python --version
but it returnsbash: python: command not found