Closed beginner984 closed 5 years ago
Breakpoint GRanges names cannot duplicated
It sounds like you have multiple rows with the same identifier. Did you concatenate two different manta VCFs into the same GRanges object? You need to make sure all row names are unique so you can either a) generate the ROC data frame for each sample then bind_rows
them together at the end (this is the approach I used in my benchmarking paper), or make sure all row names are unique (e.g. by updating the names()
and the $partner
with a sample identifier.
Hi,
Sorry, I have two SV samples from cancer and its matched model called by **Manta
** as I have attached here; When I am trying to compare with truth set and plot ROC curve I am getting this error
https://www.dropbox.com/s/7upp1517w4zjw0j/c005.vcf?dl=0
https://www.dropbox.com/s/723i1i6uvadujax/o005.vcf?dl=0
I need a plot to visualize the relationship of these samples for SVs
Any help please?