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PapenfussLab / StructuralVariantAnnotation

R package designed to simplify structural variant analysis
GNU General Public License v3.0
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<CNV> not supported #25

Open d-cameron opened 4 years ago

d-cameron commented 4 years ago

Spec-compliant CNV variants are not supported. They should be.

Error in .breakpointRanges(x, ...) : 
  Unrecognised format for variants nssv14322117, nssv14322118, nssv14322119, nssv14322120, nssv14322121, nssv14322122, nssv14322123, nssv14322124, nssv14322125, nssv14348009, nssv14348010, nssv14348011, nssv14348012, nssv14348013, nssv14348014, nssv14348015, nssv14348016, nssv14348017, nssv14289756, nssv14289757, nssv14289758, nssv14289759, nssv14289858, nssv14289859, nssv14289860, nssv14289861, nssv14289862, nssv14286954, nssv14286955, nssv14286956, nssv14286957, nssv14286958, nssv14286959, nssv14286960, nssv14286961, nssv14286962, nssv14287752, nssv14287753, nssv14287754, nssv14287755, nssv14287756, nssv14287757, nssv14287758, nssv14287759, nssv14287760, nssv14293954, nssv14293955, nssv14293956, nssv14293957, nssv14293958, nssv14293959, nssv14293960, nssv14293961, nssv14293962, nssv14293329, nssv14293330, nssv14293331, nssv14293332, nssv14293333, nssv14293334, nssv14293335, nssv14293336, nssv14293337, nssv14294894, nssv14294895, nssv14294896, nssv14294897, nssv14294898, nssv1

Report them as single breakends at the CNV bounds?