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PapenfussLab / StructuralVariantAnnotation

R package designed to simplify structural variant analysis
GNU General Public License v3.0
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could not find function ".assertValidBreakpointGRanges" #44

Closed selmapichot closed 9 months ago

selmapichot commented 9 months ago

Hi, could you please let me know why I'm bumping into this error when I run the partner() function ?

partner(colo829_b_gr,selfPartnerSingleBreakends=TRUE) Error in .assertValidBreakpointGRanges(colo829_b_gr, allowSingleBreakends = selfPartnerSingleBreakends) : could not find function ".assertValidBreakpointGRanges"

Many thanks.

d-cameron commented 9 months ago

Sounds like a versioning issue. Are you using the official BioConductor package or a devtools::install_github from here?

selmapichot commented 9 months ago

I've re-installed it with the Bioconductor package, works well now. Thank you.