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PapenfussLab / StructuralVariantAnnotation

R package designed to simplify structural variant analysis
GNU General Public License v3.0
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ERROR in converting gGrange to vcf #45

Open 9421g opened 1 week ago

9421g commented 1 week ago

I want to add PARID into the INFO field of an SV vcf file with breakend notation

>     StructuralVariantAnnotation:::breakpointGRangesToVCF(
+         breakpointRanges(
+             VariantAnnotation::readVcf('SV.delly.somatic.vcf'),
+             inferMissingBreakends = TRUE
+         )
+     )
Error: Elements 1, 2, 3, 4, 5, ... of width(gr) == 1 are not true