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PapenfussLab / StructuralVariantAnnotation

R package designed to simplify structural variant analysis
GNU General Public License v3.0
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Packaged #7

Closed lachlansimpson closed 5 years ago

lachlansimpson commented 7 years ago

Any chance this could be packaged and put into CRAN or bioc?

d-cameron commented 7 years ago

CRAN is not appropriate as it has bioc dependencies, and the package does not yet meet the Bioconductor package guidelines. In particular, VCF object behaviour bug fixes and functionality need to be moved into the VariantAnnotation package, and the $partner GRanges breakend pairing behaviour probably needs to be replaced by an S4 class.

d-cameron commented 5 years ago

I know it's very late but a BioConductor submission is now in progress.

https://github.com/Bioconductor/Contributions/issues/1079