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GRIDSS: the Genomic Rearrangement IDentification Software Suite
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how to filter breadends that are only present in particular samples? #660

Closed yqlan closed 6 months ago

yqlan commented 6 months ago

after joint call for multiple samples, how can I filter breadends that are only present in particular samples?

d-cameron commented 6 months ago

The FORMAT fields give a per-sample breakdown on the support for the variant so you can just filter for non-zero support (or very low support if cross contamination is possible) in your samples of interests.