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PapenfussLab
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gridss
GRIDSS: the Genomic Rearrangement IDentification Software Suite
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Error when running gridss_somatic_filter
#635
kcleal
opened
1 year ago
8
Docker gridss image cannot find reference genome
#634
mxiong2
closed
1 year ago
4
VirusBreakend Running Error
#633
DAWNkKim
opened
1 year ago
0
Bump guava from 30.0-jre to 32.0.0-jre
#632
dependabot[bot]
opened
1 year ago
0
gridss call error
#631
vitty0513
opened
1 year ago
2
Retrieving supporting reads from original BAM
#630
blex-max
closed
1 year ago
4
gridss call Exception
#629
vitty0513
closed
1 year ago
2
gridss assembly
#628
vitty0513
closed
1 year ago
1
Downloads of VIRUSBreakend reference data FAIL at same spot
#627
sbilobram
opened
1 year ago
0
Need help for multiple input
#626
licenzart
closed
1 year ago
1
Cant create docker image - Package 'hmmer' has no installation candidate
#625
MehmetGoktay
opened
1 year ago
0
Short insert size
#624
oghzzang
closed
1 year ago
4
some samples take really long time to be proceed...
#623
nan5895
closed
1 year ago
1
GRIDSS should force DEL-with-INS alignment to prevent inconsistency between asm and direct read calls
#622
RobinVanSchendel
opened
1 year ago
2
Inconsistent calling results after rerun with the same set of bam files and parameters
#621
gseryogin
opened
1 year ago
6
Remove carriage return (\r) from gridss_somatic_filter
#620
mnshgl0110
closed
1 year ago
0
PONs from joint-calling or merge VCFs?
#619
mnshgl0110
closed
1 year ago
1
added simple-event-annotation as a command line script
#618
mnshgl0110
opened
1 year ago
3
Variant call using multiple assembly files
#617
mnshgl0110
closed
1 year ago
3
gridss 2.13.2 samtools sort error
#616
jdekanter
closed
1 year ago
2
Error while running gridss_somatic_filter
#615
mkyriak
closed
1 year ago
5
bcftools failed with GRIDSS output
#614
lmanchon
closed
1 year ago
2
convert non standard VCF fields from GRiDSS output to standard VCF fields ?
#613
lmanchon
closed
1 year ago
1
GRIDSS and Illumina Connected Analytics / DRAGEN Integration
#612
DarioS
opened
1 year ago
0
BEALN parsing crashes on contigs containing ":" characters
#611
hubentu
opened
1 year ago
0
How to extract high-quality SVs from VCF file?
#610
dr-ashu-geno
closed
1 year ago
6
Species "human" is not known to RepeatMasker
#609
chualec
opened
1 year ago
2
set VALIDATION_STRINGENCY=LENIENT for virusbreakend
#608
hubentu
opened
1 year ago
3
Gridss sv calling in non-illumina technologies
#607
DomManou
closed
1 year ago
1
Bump htsjdk from 2.23.0 to 3.0.1
#606
dependabot[bot]
opened
1 year ago
0
Cannot find PON files
#605
gspirito
opened
1 year ago
3
Error in assembly step
#604
senzhaocode
closed
1 year ago
1
Empty base quality strings in fastq created during VIRUSBreakend for old bam files
#603
toddajohnson
opened
2 years ago
3
long chromosomes that require .csi index lead to htsjdk error
#602
jjuod
opened
2 years ago
1
PositionalAssembler Errors >100 times
#601
jackieduckie
opened
2 years ago
1
Exception in thread "main" java.lang.RuntimeException: java.lang.RuntimeException:
#600
jigaoxiang
opened
2 years ago
2
Error during assembly
#599
YiBenqiu
opened
2 years ago
3
Two large genomes
#598
Karimi-81
closed
2 years ago
1
Fix constant name in gridsstools.c
#597
martin-g
opened
2 years ago
0
Use StrictMath to get same results on different CPU architectures
#596
martin-g
opened
2 years ago
0
Use JUnit assumption in SswJniAlignerTest
#595
martin-g
opened
2 years ago
0
CRAM Input Ignored
#594
DarioS
opened
2 years ago
3
calling gridss_annotate_vcf_repeatmasker
#593
MjelleLab
closed
2 years ago
0
Feature request: Add support for Linux ARM64
#592
martin-g
opened
2 years ago
2
Fail to use "gridss_somatic_filter"
#591
LiyuanYe
opened
2 years ago
2
High-confidence normal/germline SV filtering
#590
tgong1
closed
2 years ago
1
heatmap
#589
asntech
closed
2 years ago
0
INFO fields with several tumor samples
#588
stsergbg
closed
2 years ago
2
virusbreakend output files
#587
MjelleLab
closed
2 years ago
1
Feature request: `--version` command line option
#586
scwatts
opened
2 years ago
2
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