Open kushalgohil opened 5 years ago
Please carefully follow the instructions in README. The --ql
or --rl
option expect a text file, with list of genomes. It looks like you are specifying the path to folder where they are saved, which won't work. You would need to create one file, that contains paths to all your genomes.
On linux, following would help ls -1 /home/ncim/ncbi_genomes/* > list_of_genomes.txt
I am doing "Many to Many" ANI calculation using fastANI and getting following error,
$ fastANI --ql /home/ncim/ncbi_genomes --rl /home/ncim/ncbi_genomes -o home/ncim/ncbi_genomes/all.out
What could go wrong? Please help. When I did "One to One" ANI calculation everything worked fine, but when I am doing many to many ANI calculation I am getting the error.