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ParBLiSS / FastANI

Fast Whole-Genome Similarity (ANI) Estimation
Apache License 2.0
374 stars 67 forks source link

All vs. all ANI comparison #56

Closed VadimDu closed 4 years ago

VadimDu commented 4 years ago

Dear developers,

It is not entirely clear from your documentation how to do an all vs. all ANI calculations. Should the user provide --queryList and --refList parameters with the same list of genomes in each of the files? I understand that --matrix need to be added to get the output in a lower triangular matrix form, but the specific input is not clear.

Thank you for the clarification, Best,

Vadim D

cjain7 commented 4 years ago

Should the user provide --queryList and --refList parameters with the same list of genomes in each of the files?

Yes