How to get the alignment fraction value?

ParBLiSS / FastANI

Fast Whole-Genome Similarity (ANI) Estimation

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How to get the alignment fraction value? #94

Open liyangjie opened 2 years ago

liyangjie commented 2 years ago

Hello everyone, I noticed that fastANI has a parameter --minFraction, and i want to know how to get the specific value of this “average alignment fraction" by fastANI. Thank you a lot!

cjain7 commented 2 years ago

See the last two columns in the output file. Ratio of the two values in each row should give you alignment fraction for that comparison. https://github.com/ParBLiSS/FastANI#an-example-run