Error when running Rscript

ParBLiSS / FastANI

Fast Whole-Genome Similarity (ANI) Estimation

Apache License 2.0

368 stars 66 forks source link

Open carolinasisco opened 2 years ago

carolinasisco commented 2 years ago

Hello, I was trying to run the Rscript provided for visualizing conserved regions using the following command line:

Rscript visualize.R ~/nocardia/ragtag_output/ragtag.scaffold.fasta ~/nocardia/nfarcinica.fasta ~/nocardia/fastANIresult.visual

However, I got:

Error: unexpected '<' in "<" Execution halted

Any suggestions? Thanks

cjain7 commented 2 years ago

Can you share the two genomes, FastANI version, and the commands executed?