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Terrestrial Parasite Tracking Reporting Methods
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error updating ucsb-izc #13

Closed seltmann closed 4 years ago

seltmann commented 4 years ago

I am able to update all of the datasets except ucsb-izc. I updated to elton 0.9.5 and had no problem with these datasets: globalbioticinteractions/fmnh globalbioticinteractions/mpm globalbioticinteractions/ummzi globalbioticinteractions/inhs-insects globalbioticinteractions/vectorbase globalbioticinteractions/vertnet globalbioticinteractions/scan

any clues?

Katjas-MacBook-Pro:globalbioticinteractions katjaseltmann$ elton update globalbioticinteractions/ucsb-izc >log-04-26-ucsb-izc.txt updating [globalbioticinteractions/ucsb-izc]... failed to handle namespace [globalbioticinteractions/ucsb-izc] org.globalbioticinteractions.dataset.DatasetFinderException: failed to configure dataset in namespace [globalbioticinteractions/ucsb-izc] with archiveURI [https://github.com/globalbioticinteractions/ucsb-izc/archive/6438c9708585c5ac3ee3296d09deed822da4ff37.zip] and citation [Accessed on 2020-04-27T04:02:22.053Z via https://github.com/globalbioticinteractions/ucsb-izc/archive/6438c9708585c5ac3ee3296d09deed822da4ff37.zip.] at org.globalbioticinteractions.dataset.DatasetFactory.datasetFor(DatasetFactory.java:51) at org.globalbioticinteractions.elton.cmd.CmdUpdate.lambda$run$0(CmdUpdate.java:65) at org.globalbioticinteractions.elton.cmd.CmdUtil.handleNamespaces(CmdUtil.java:47) at org.globalbioticinteractions.elton.cmd.CmdUpdate.run(CmdUpdate.java:80) at org.globalbioticinteractions.elton.cmd.CmdLine.run(CmdLine.java:18) at org.globalbioticinteractions.elton.cmd.CmdLine.run(CmdLine.java:27) at org.globalbioticinteractions.elton.Elton.main(Elton.java:20) Caused by: org.globalbioticinteractions.dataset.DatasetFinderException: failed to find configuration at org.globalbioticinteractions.dataset.DatasetFactory.configDataset(DatasetFactory.java:77) at org.globalbioticinteractions.dataset.DatasetFactory.datasetFor(DatasetFactory.java:46) ... 6 more

seltmann commented 4 years ago

Also, how do you update all of the datasets in the datasets.tsv, rather than one at a time?

seltmann commented 4 years ago

@jhpoelen elton update globalbioticinteractions/ucsb-izc is giving me an error. The rest of the datasets I can update with no issue

globalbioticinteractions/fmnh globalbioticinteractions/mpm globalbioticinteractions/ummzi globalbioticinteractions/inhs-insects globalbioticinteractions/vectorbase globalbioticinteractions/vertnet globalbioticinteractions/scan

jhpoelen commented 4 years ago

Error was reproduced in travis - https://travis-ci.com/github/globalbioticinteractions/ucsb-izc .

Looks like files README.md and globi.json were (accidentally?) removed via https://github.com/globalbioticinteractions/ucsb-izc/commit/665832f992dc1add33d31fb78e1266b580014d19 .

seltmann commented 4 years ago

That was it, thanks