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ParasiteTracker / tpt-reporting

Terrestrial Parasite Tracking Reporting Methods
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Report integration with GDocs #8

Closed seltmann closed 4 years ago

seltmann commented 4 years ago

@jhpoelen idea to put summary reports on GDoc and link to https://github.com/ParasiteTracker

Screen Shot 2020-02-12 at 2 40 54 PM Screen Shot 2020-02-12 at 2 40 18 PM
seltmann commented 4 years ago

@jhpoelen review summary no longer including "likely describes a biotic interaction." Can you please put that back into the summary for both overall and collection based?

"likely describes a biotic interaction" indicates the number of records that may be indexed by GloBI.

An added addition would be "number of records examined for biotic interactions."

jhpoelen commented 4 years ago

I've added the "info" review types.

Now, review_summary.tsv reads:

distinctReviewCommentCount type comment
1454 info biotic interaction found
1 issue found unsupported interaction type with name: [In]
385 issue target taxon name missing
386 info no biotic interaction found

and review_summary_by_collection.tsv

institutionCode collectionId collectionCode sourceCitation distinctReviewCommentCount type comment
UCSB 6d00282e-3374-4a82-91a3-723372c9247b UCSB University of California Santa Barbara Algae Collection 10 info biotic interaction found
UCSB 6d00282e-3374-4a82-91a3-723372c9247b   University of California Santa Barbara Algae Collection 133 info biotic interaction found
UCSB e7c51ab1-870b-4ee8-9d62-092875ffa870 IZC University of California Santa Barbara Invertebrate Zoology Collection 1311 info biotic interaction found
UCSB e7c51ab1-870b-4ee8-9d62-092875ffa870 IZC University of California Santa Barbara Invertebrate Zoology Collection 1 issue found unsupported interaction type with name: [In]
UCSB e7c51ab1-870b-4ee8-9d62-092875ffa870 IZC University of California Santa Barbara Invertebrate Zoology Collection 385 issue target taxon name missing
UCSB e7c51ab1-870b-4ee8-9d62-092875ffa870 IZC University of California Santa Barbara Invertebrate Zoology Collection 386 info no biotic interaction found

The total amount of examined records can be inferred by adding "biotic interaction found" and "no bioticinteraction found" categories.

jhpoelen commented 4 years ago

Correction - number of examined records is available after implementation of https://github.com/globalbioticinteractions/elton/issues/28 .

jhpoelen commented 4 years ago

@seltmann we ended up using Zenodo and review/indexed-interactions via https://depot.globalbioticinteractions.org/review/... . Suggest to close this issue.