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ParkerICI / panorama

R package for interactive visualization and analysis of single-cell data
GNU General Public License v3.0
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error in panorama - cannot create clusters_data directory #1

Closed CNicholasMDA closed 6 years ago

CNicholasMDA commented 6 years ago

HI Federico, I was using panorama and got this error.

Warning: Error in panorama:::plot_clusters: clusters_data directory is missing, data cannot be plotted

Where precisely does the clusters_data directory belong? in parallel with the clustered directory, or within it? Or somewhere else? I was using the GUI for grappolo, vite, and panorama, in MacOS.

pfgherardini commented 6 years ago

The clusters_data directory should be a subfolder of the folder that contains the graphml files. It should be created automatically when you create the graph though. Is it not there? How are you creating the graph?

CNicholasMDA commented 6 years ago

Hi Federico! Sorry for leaving the old query open. I don't think I'm having this problem anymore, but if I do I will re-open. Thanks!