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ParkerICI / panorama

R package for interactive visualization and analysis of single-cell data
GNU General Public License v3.0
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Cant make scatter/boxplots #6

Open Stein-ErikG opened 5 years ago

Stein-ErikG commented 5 years ago

Hi,

I have been trying to make scatter/boxplots in panorama, and i cant make it work. I feel i have tried any conceivable combination of things ticked or markers chosen. I want to look at a functional marker p38 in my three groups: baseline/4h/24h. i have these three samples from 6 patients, a total of 18 files. What am i doing wrong? And how do i get the heatmap? Skjermbilde 2019-04-16 kl 09 46 19

pfgherardini commented 5 years ago

Well in this specifc example you have shared in the screenshot you are selecting Boxplot instead of scatterplot, but i am assuming you hvae tried that as well.

Can you share the data with me in a Box/Dropbox folder so that i can take a look? I need the full content of the scaffold_result folder

Stein-ErikG commented 5 years ago

sure! i don’t have a scaffold/results folder to share, but i can send some code with markers used, metadata.tab.txt, clustered fcs files/cluster_data folder, and the graphml file from vite. is than enough? i have never used box. is that the drag and drop thing below? only you can access the data right?

  1. apr. 2019 kl. 20:44 skrev Pier Federico Gherardini notifications@github.com:

Well in this specifc example you have shared in the screenshot you are selecting Boxplot instead of scatterplot, but i am assuming you hvae tried that as well.

Can you share the data with me in a Box/Dropbox folder so that i can take a look? I need the full content of the scaffold_result folder

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/ParkerICI/panorama/issues/6#issuecomment-483796708, or mute the thread https://github.com/notifications/unsubscribe-auth/AdQ1vuKRbfEILl3aOFjGCV0SktBmhf6qks5vhholgaJpZM4cxlyc.

pfgherardini commented 5 years ago

sorry i meant to say i need the graphml file and the content of the clusters_data directory. By Box i meant either Dropbox or Box the file sharing services (or Google Drive or whatever else you want to use).

You can share it to my email, which you can find in this file

https://github.com/ParkerICI/vite/blob/master/DESCRIPTION

Troylimyj commented 2 years ago

Is there a resolution to the top question as I have experienced a similar issue? Thank you.