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ParkerLab / homebrew-tap

Homebrew tap for software from the Parker Lab at the University of Michigan
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ATAC-QC install error #1

Open bongsoopark opened 7 years ago

bongsoopark commented 7 years ago

Hello,

I'm a research fellow at JHU. I faced this problem when I tried the installation of the ataqv package. Any suggestions?

~ $ brew install ataqv ==> Installing ataqv from parkerlab/tap ==> Downloading https://github.com/ParkerLab/ataqv/archive/0.9.2.tar.gz Already downloaded: /home/bongsoo/.cache/Homebrew/ataqv-0.9.2.tar.gz ==> make install prefix=/home/bongsoo/.linuxbrew/Cellar/ataqv/0.9.2/ Last 15 lines from /home/bongsoo/.cache/Homebrew/Logs/ataqv/01.make: ^ In file included from /tmp/ataqv-20170727-23001-vnbi11/ataqv-0.9.2/src/cpp/Metrics.cpp:21:0: /tmp/ataqv-20170727-23001-vnbi11/ataqv-0.9.2/src/cpp/Metrics.hpp:221:5: error: 'json' does not name a type json to_json(); ^ /tmp/ataqv-20170727-23001-vnbi11/ataqv-0.9.2/src/cpp/Metrics.cpp:1223:1: error: 'json' does not name a type json Library::to_json() { ^ /tmp/ataqv-20170727-23001-vnbi11/ataqv-0.9.2/src/cpp/Metrics.cpp:1242:1: error: 'json' does not name a type json Metrics::to_json() { ^ /tmp/ataqv-20170727-23001-vnbi11/ataqv-0.9.2/src/cpp/Metrics.cpp:1421:1: error: 'json' does not name a type json MetricsCollector::to_json() { ^ make: *** [build/Metrics.o] Error 1

umijh commented 7 years ago

I believe the 0.9.4 release of ataqv has fixed this. More recent versions of HTSlib than I'd tested with introduced the 'json' namespace clash. Please try 'brew install ataqv' again and let me know how it goes.