bad line in nhmmer output - Fatal exception (source file ../../easel/esl_sq.c, line 231):

ParkinsonLab / MetaPro

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bad line in nhmmer output - Fatal exception (source file ../../easel/esl_sq.c, line 231): #28

Closed decoder108 closed 4 months ago

decoder108 commented 5 months ago

singularity exec -B databases/:/mnt/databases -B .:/mnt/host metapro_v3.0.1.sif python3 /pipeline/MetaPro.py -c /mnt/host/Config.ini -1 /mnt/host/forward.fastq -2 /mnt/host/reverse.fastq -o /mnt/host/out/

I am running MetaPro pipeline using singularity with all the paths and databases set but I am receiving this error after the quality filtering step:

bad line in nhmmer output - Fatal exception (source file ../../easel/esl_sq.c, line 231):

Please provide a solution to this

billytaj commented 5 months ago

1) this looks like a problem in your computer, not an issue with the pipe's code. pipeline is in Python. this is a C error with nhmmer. 2) your launch line looks off. unsure if singularity actually has access to /mnt. Please recheck your bind-mounts.