taxid_trees missing from custom databases in docker images

ParkinsonLab / MetaPro_tutorial

Microbiome tutorial, running on MetaPro

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taxid_trees missing from custom databases in docker images #1

Closed akinkhabwala closed 2 months ago

akinkhabwala commented 10 months ago

Hi!

I'm afraid I'm getting stuck at the Genome Assembly (GA) step, because I can't find the taxid_trees files. I've tried using both the v3.0.1 and "latest" docker images, but neither of them seem to have the taxid_trees files in the /pipeline/custom_databases folder. I can't find any information on where to download these files, so I think I've hit a wall. Any help you can provide would be greatly appreciated!

Cheers, Anika

billytaj commented 2 months ago

Taxid trees isn't part of this tutorial.