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ParkinsonLab / Metatranscriptome-Workshop

Metatranscriptomics Tutorial
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Error for '3_Reduplicate.py' #15

Open eray-sahin opened 3 years ago

eray-sahin commented 3 years ago

Hello,

First of all, thank you for sharing such a great material, it really helps me to understand the general structure in the analysis.

While I was trying to follow the steps I encountered with some errors in using some python scripts. For 'Rereplication' step, I used third python script named '3_Reduplicate.py', but got the error below;

Traceback (most recent call last): File "/home/eraysahin/parkinsonlab/3_Reduplicate.py", line 33, in cluster_map[rep].append(seq_id) KeyError: ''

Can you help me to solve the issue?

Thank you,

Best regards,

billytaj commented 3 years ago

Hi Eray, There's going to be a new tutorial coming soon with a new pipeline. I'd say maybe wait a few days.

eray-sahin commented 3 years ago

Hi @billytaj,

Great news, looking forward to it.

Thank you,

Best regards,