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ParkinsonLab / Metatranscriptome-Workshop

Metatranscriptomics Tutorial
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6_BWA_Gene_Map.py #8

Open kaiwang12 opened 6 years ago

kaiwang12 commented 6 years ago

Hi, I got an error when running ./6_BWA_Gene_Map.py. Here is the error information: Traceback (most recent call last): File "./6_BWA_Gene_Map.py", line 117, in gene_map(BWA_sam_file, unmapped_reads) File "./6_BWA_Gene_Map.py", line 54, in gene_map db_match = line_parts[1] IndexError: list index out of range

Any idea why this occurred? Thanks.

billytaj commented 6 years ago

Hi, did you verify that the other steps were working properly? This error means that you had no matches.

NOngeso commented 3 years ago

Was this error rectified for this step. Can we get the original script you used to execute this step