search

Pas-Kapli / mptp

mPTP - a tool for single-locus species delimitation
GNU Affero General Public License v3.0
24 stars 5 forks source link

Rename --support option and create single and multi variations #61

Closed xflouris closed 8 years ago

xflouris commented 8 years ago

Currently, the --support option only works for multi-rates. Adjust it to work for single-rate PTP as well.

The option should be renamed to: --support_multi and --support_single

or optionally,

to --support and incorporate the options --single and --multi (default: multi).

If we opt for the second choice, then --ml_multi and --ml_single should also be modified to --ml only and use --single and --multi for specifying the method.

EDIT: Actually, the word support should be renamed to mcmc.

lutteropp commented 8 years ago

Implemented the second choice.

I had no tree file to check whether the computed P value for the single lambda case is still correct, the rest seems fine. I also removed the prior options.